Files
Working Datasets
Tree Files for use in FigTree:
Datasets for multiple sequence alignment:
For use in the analysis of substitution saturation:
Selection tests
Additional tutorial.
For use in the BEAST+EBSP tutorial:
Programs, Applications and Tools
- MEGAX
- DAMBE
- Bioedit
- gedit
- jModelTest
- Prottest 3
- ModelTest-ng
- BEAST2
- BEAST 1.8
- Clustal X
- PAMLX
- R
- Aliview
- FigTree
- Jalview
- TrimAL
Online Tools
Comparative and exploratory phylogeny, as well as phylogenetic trees annottion.
Alignment program. Several options depending on your dataset.
Site with on line phylogenetics tools and pipelines. There, you can use TrimAL to "clean" gappy alignments.
Several tools used in selection tests, recombination and gene conversion detection.
A tool to infer eukaryotic nuclear protein-coding genes inactivation.
Public portal containing pipelines for inferring phylogenies.
Additional Links
References
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